Keyword: bioinformatics
- @codonsplice/wasmReleased7h agoVersion0.5.0
CodonSplice — run SpliceQL genomic queries (BAM/VCF) in the browser via WASM
- @rbrowser/mainReleased5d agoVersion1.0.69
RBrowser is a novel RNA-centric data exploration platform
- @codonsplice/editorReleased7h agoVersion0.5.0
Reusable CodeMirror 6 SpliceQL editor (syntax highlighting + IntelliSense) for the CodonSplice engine
- @cyanheads/protein-mcp-serverReleased5d agoVersion0.1.4
Federated protein structure & annotation across experimental (PDB) and predicted (AlphaFold) models via MCP. STDIO or Streamable HTTP.
- h5adexpReleased4d agoVersion0.1.17
Single-file H5AD exploration service and LAN-friendly CLI
- @nadeemlab/sm-rustReleased6d agoVersion0.0.3
Spatial multiomics primitives (neighbour graphs, Moran's I, nhood enrichment, Ripley, co-occurrence) compiled to WebAssembly.
- pubmed-client-linux-arm64-muslReleased4d agoVersion0.2.0
Node.js native bindings for PubMed/PMC API client
- agr-mcp-serverReleased2d agoVersion5.1.0
MCP server for Alliance of Genome Resources - access genomics data across model organisms
- pubmed-client-linux-arm64-gnuReleased4d agoVersion0.2.0
Node.js native bindings for PubMed/PMC API client
- @cyanheads/uniprot-mcp-serverReleased22h agoVersion0.2.1
Search UniProtKB by protein function, fetch curated records, map IDs across databases, and pull reference proteomes, taxonomy, and sequences via MCP. STDIO or Streamable HTTP.
- @cyanheads/gnomad-genetics-mcp-serverReleased22h agoVersion0.1.3
Look up variant allele frequencies by ancestry, gene loss-of-function constraint, gene variant lists, and sequencing coverage over gnomAD — with ClinVar significance joined in — via MCP. STDIO or Streamable HTTP.
- @galaxyproject/galaxy-cliReleased3d agoVersion0.1.0
Command-line interface for Galaxy agent operations -- histories, datasets, tools, workflows, and the IWC catalog.
- @galaxyproject/galaxy-mcpReleased3d agoVersion0.1.0
Model Context Protocol (MCP) server exposing Galaxy agent operations as tools over stdio.
- @galaxyproject/galaxy-opsReleased3d agoVersion0.1.0
Framework-free TypeScript core for Galaxy agent operations: a typed Galaxy API client, an operation registry, and run/poll orchestration.
- @codonsplice/cliReleased7h agoVersion0.5.0
CodonSplice genomic query engine — splice CLI
- pubmed-clientReleased4d agoVersion0.2.0
Node.js native bindings for PubMed/PMC API client
- pubmed-client-darwin-arm64Released4d agoVersion0.2.0
Node.js native bindings for PubMed/PMC API client
- pubmed-client-linux-x64-muslReleased4d agoVersion0.2.0
Node.js native bindings for PubMed/PMC API client
- pubmed-client-linux-x64-gnuReleased4d agoVersion0.2.0
Node.js native bindings for PubMed/PMC API client
- pubmed-client-win32-x64-msvcReleased4d agoVersion0.2.0
Node.js native bindings for PubMed/PMC API client
- pubmed-client-darwin-x64Released4d agoVersion0.2.0
Node.js native bindings for PubMed/PMC API client